You didn't mention if you cleaned the carb during your rebuild..
Sounds like some of the dirt from the float bowl got pulled up into the idle jet..pull the carb off and strip it down.
A good cleaning, blow the jets out with compressed air and it should be good.
Current toys..
1986 Honda 350X..trail bomb!
1985 Honda 250SX..my main mudder
1985 Honda 250ES..Back in Black Trike
Current non-trike toys:
1990 Honda TRX300FW
1995 Seadoo GTX
1998 Polaris Indy Lite 340(Nearly new looking)
1998 Polaris Touring 500
1998 Club Car (electric)