Good upgrades would be 83-85 200x front end, but you change the appearance with the skinny front tire. They have better travel and better disc brakes. For the carb, a 85-86 250R carb is a great upgrade and will alow the motor, even a stock motor, to breath much better. Get a pipe, either old school aftermarket would be best, or a new DG, and that will really wake the motor up. You could also get the top end ported, to allow for much better power. I dont think the 83-84 R rear end will bolt on without a lot of mods, the frames and mounting points are different, and the second gen uses a link. Another thing to keep your eye out for is a Hondaline 300 top end. You can still use all the engine mods listed above as well.
THE 80's RAGE! Currently owns:
81, 85 Yamaha Tri Moto 125
83 Yamaha Tri Moto 200 x2
82,83 Yamaha Tri Moto 175 project
85 Yamaha Tri Z 250
84 Kawasaki Tecate 250
84 Honda ATC 70
85 Honda ATC 350X
84 Honda ATC 250R
(2) 84 Honda ATC 200x
82, 83 Honda ATC 185s
81 ATC 200
Lots of other parts and bikes