Though I haven't experience it myself I have seen other discussions on this..
I believe the issue you are having is with the one way clutch. In addition to your complaint they have also spoken of a whirring noise when the engine is shut off too.
Current toys..
1986 Honda 350X..trail bomb!
1985 Honda 250SX..my main mudder
1985 Honda 250ES..Back in Black Trike
Current non-trike toys:
1990 Honda TRX300FW
1995 Seadoo GTX
1998 Polaris Indy Lite 340(Nearly new looking)
1998 Polaris Touring 500
1998 Club Car (electric)