I get what your saying about the spacer plate, it does seem that if you had a short rod you wouldn't need the spacer. And if you had a long rod you would. I guess the bottom line is that they are intended for use on the quads, not the atc. As far as I know all the engines after 86 were long rods and all quads of corse because there was no atc after that.
That being said, I have the esr 330 in my atc with a long rod. It makes gobs of power, way more than a stocker, and actually has good torque too. It just runs very hot !. Mine is sitting in the barn right now because it seized up on the last trip and i'm still pissed about it.
If I were to do it again I would use a stock cylinder with a good port job and put the other $2000 back in my pocket.
YAMAHA 450 HYBRID
85 350X- RED
85 350x -BLACK
86 350x-WHITE (with Goki)
85 250r
83 atc 70
84 atc 70
84 atc 110
09 yfz 450
2006 Arctic Cat Prowler
RZR XP 900