Did I read that right that you removed the airbox completely and put a filter right on the carb? If you did that would require a big jet increase. I'm used to Kehin jet sizes (guessing you have Mikuni?), but put in the biggest one you have and see how it runs. If it misses, its rich, go smaller until it clears up. When jetting you want to start rich and work lean.
1985 ATC250ES
1985 ATC250SX
1984 ATC200S "Little Red" - Trailer hitch, Hondaline: Front and Rear Racks, Cooler Rack, Tripmeter, HL Grille, Rubber Footpeg Covers, Mudflaps.
1985 ATC70
2008 CRF230L - Dual Sport
2016 TRX500 Foreman Rubicon Deluxe