I just put my one 350x together which i still beleive is the 87 and finding lots of little things different, as for straigthing that out i had sorta the same probaly i heated it up a little and then vice grips and bent it striaght. Look at your top triangle motor mounts and look if they are soild or have the cut out in them, I am going to post some pics of all the things i have have that are different.
1986 452x, 4inch westcoast swinger, full exhaust, and stage 5 racing kit
99 honda 300 4x4
06 Forman 500 4x4
07 Fourtrax 420 FI
Previous rides
81 250r, 83 Cr 250, 85 250 big red, 80 185, 84 200s, 83 KLT 200, 86 Alt 185, 01 WR 250, 83 250r, 84 250r, 1986 350x, 1985 350x, 87 350x, 91 big bear, 01 DS 650, 03 Kodiak 450.