The auto clutch part of the tranny engages based on RPM. It is a cyntrifical clutch. I am not sure how you are planning to couple your motor to the tranny, it is intergral to the crank in the 110 motor. If you have that part figured out, I might recommend using a honda tranny with a manual clutch instead of the auto clutch setup of the ATC110. Then you would have control of the clutch.
ATCnut
82 185s - sold
83 200x (hopped up)
84 200x (stock)
84 70 (lost this one to the DMV)
85 70 (soon to have lights, a foot brake, and CDI ignition)
84 200es (parts trike) - sold
85 350X (the best)
85 350X (siezed motor, dream of a poweroll kit someday)
85 250sx (frame was trash, got parted out)
86 250sx (the tractor)
86 250sx (a nicer tractor)
86 250sx (an even nicer tractor)
87 200x (parts trike, its really rough, a dog was chewing on it for a while)
87 250es Big Red (the tank!!)